Own analysis software
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Stimulus presentation, timing control and response collection
Psychopy - Jonathan Peirce's very powerful and easy-to-use package for building and running experimental designs. Interfaces with multiple external hardware, and compiles on multiple platforms (Windows, OSX, Linux). Written in Python. Also, it is available for free!!
EventIDE - A very powerful, easy-to-use and cool software package that allows you to quickly build your own experiment involving stimulus presentation (visual, auditory), response logging (button presses, reaction times), physiological measures using external systems (eye-movements, EEG) and other amazing features. My review of the software can be found here. Only available for Windows users.
FMRI data analysis
NeuroElf - A matlab toolbox that allows easy access to and interfaces between (F)MRI data formats of various software packages, including BrainVoyager, SPM and FSL. Extremely powerful and versatile in its use, and easy to adapt to own interests. Written and developed by Jochen Weber.
BrainVoyager - A commercial software package to analyse neuroimaging data. Functionality includes preprocessing and analysis of FMRI data (motion correction, smoothing, Talairach standardization, GLM, ICA), an E/MEG suite for analysis of EEG and MEG timeseries, DTI analysis and fiber tracking and a TMS neuronavigation module (amongst other modules).
FSL - FMRIB Software Library. A linux-based set of analysis and visualization tools for (F)MRI and DTI data.
Ancestral Graph Theory - A directed path model developed by Lourens Waldorp in R, which can be downloaded from Lourens' personal website. It has recently been applied to analyse effective connectivity of FMRI data during speech production (see here) and response inhibition.
EEG/MEG data analysis
EEGLAB - A matlab toolbox developed by Scott Makeig and Arnaud Delorme at UC San Diego, USA. Very strong in Independent Component Analysis! Also supports source reconstruction and time-frequency analysis (Wavelet-based).
Fieldtrip - A matlab toolbox for MEG and EEG analysis that is being developed by a team of researchers at the Donders Institute for Brain, Cognition and Behaviour in Nijmegen, the Netherlands.
General
Matlab's FileExchange - a huge and growing collection of non-commercial matlab code dealing with a wide variety of computational, visualization or data handling issues.
Psychopy - Jonathan Peirce's very powerful and easy-to-use package for building and running experimental designs. Interfaces with multiple external hardware, and compiles on multiple platforms (Windows, OSX, Linux). Written in Python. Also, it is available for free!!
EventIDE - A very powerful, easy-to-use and cool software package that allows you to quickly build your own experiment involving stimulus presentation (visual, auditory), response logging (button presses, reaction times), physiological measures using external systems (eye-movements, EEG) and other amazing features. My review of the software can be found here. Only available for Windows users.
FMRI data analysis
NeuroElf - A matlab toolbox that allows easy access to and interfaces between (F)MRI data formats of various software packages, including BrainVoyager, SPM and FSL. Extremely powerful and versatile in its use, and easy to adapt to own interests. Written and developed by Jochen Weber.
BrainVoyager - A commercial software package to analyse neuroimaging data. Functionality includes preprocessing and analysis of FMRI data (motion correction, smoothing, Talairach standardization, GLM, ICA), an E/MEG suite for analysis of EEG and MEG timeseries, DTI analysis and fiber tracking and a TMS neuronavigation module (amongst other modules).
FSL - FMRIB Software Library. A linux-based set of analysis and visualization tools for (F)MRI and DTI data.
Ancestral Graph Theory - A directed path model developed by Lourens Waldorp in R, which can be downloaded from Lourens' personal website. It has recently been applied to analyse effective connectivity of FMRI data during speech production (see here) and response inhibition.
EEG/MEG data analysis
EEGLAB - A matlab toolbox developed by Scott Makeig and Arnaud Delorme at UC San Diego, USA. Very strong in Independent Component Analysis! Also supports source reconstruction and time-frequency analysis (Wavelet-based).
Fieldtrip - A matlab toolbox for MEG and EEG analysis that is being developed by a team of researchers at the Donders Institute for Brain, Cognition and Behaviour in Nijmegen, the Netherlands.
General
Matlab's FileExchange - a huge and growing collection of non-commercial matlab code dealing with a wide variety of computational, visualization or data handling issues.